Thanks for your replies fellas. I just finished putting her back together and took her for a spin...man she rocked! I have had issues with the left side since I built her which is right around the time I joined this site. Thought it was carb tuning, timing, or something more serious. Left exhaust ran cold, felt like it only ran on right cylinder. Left Spark plug was always wet and didn't look like it was getting spark. I replaced coil, plugs, wires, alt brushes, got unipods and got rid of the k&n pods, went back and forth on jet sizes and was getting pretty defeated, bike looked great but rode like crap. It turned out It was just the tee was not allowing enough fuel fast enough in the bowl so left carb was always starving and backfiring and lacking power...wow. When I rebuilt carbs it was leaking from the tee on both sides so I repaired it using some fuel line and the leaking went away. I did everything all of you suggested pretty much to clear it up and it all helped, one thing I noticed also helped was turning the tee up and down a few times and pushing it out to the right side a bit. I guess it was too far to the left and moving it up and down and pushing it to the right helped seat the tee and free it up some. Man now I need better brakes! Brakes are a bit scary lol especially with the rear sets, kinda wish I didn't install those, I think I had more leverage with the stock rear brake pedal, oh well will need to ride it and get used to it.
She runs great: did 650 central re jet kit with titanium adjustable needles 3rd slot, 135mj, 45pj, 2.5 turns out and sync'd carbs using a gauge tool I bought on eBay.
I have Omar's half mile exhaust and unipods, using coil from mikes and ngk wires, NGK iridium 7 plugs. Feels really strong and responsive. Thank you all for the help, I couldn't have built this without this site and all of your input. Never before this had I worked on a bike or carbs, I'm a turbo fuel injection guy, but I gotta say I had a lot of fun building it.