I think the differences are somewhat subtle but distinct, and you are obviously welcome to choose either approach as per your own feelings. And...if you use the nominated port on the stock carburetor, VW's engineers will have picked for you!
That said, my lore has always contributed that, for most street applications, manifold vacuum is preferred for better idle quality, cooler running temperatures, and crisper throttle response. I believe ported vacuum was designed for emissions control to reduce emissions at idle but can run hotter and offers little to no advance until the throttle is opened.