Can't really tell from that photo, is the engine sitting level front to back?
If it's tipped back keep in mind the dip stick is at the very back of the motor.
and full "back there" may leave the oil level low at the sump filter.
Can you use the dip stick?
Might try a heat shield tween the pipe and the RH float bowl.
VM34s on it now?
So I reread your first post and think you may want to do a bit of surgery, check what brass is in those carbs, especially the slides, needles, needle jets. Have you tried
raising/lowering the needles? 3-4000 is going to be mainly on the needles. Get above that and the mains start doing the job. "Nursing through" usually points towards lean. What air filters are you running?
mebbie a pic as it's currently set up.
Some baseline tuning/brass ideas for VM34s
https://www.xs650.com/threads/help-me-id-these-and-can-they-be-tuned-mikunis.6570/page-4#post-547589
Without knowing the history of the carbs they may contain brass/slides that are only a distant relation to what will make an XS650 motor happy.
Straight pipes will always be a compromise for motor tuning.