Capt Zoom,
As the others have said, the probe is probably polarity sensitive. With a dual output coil, one of the wires is positive and the other is negative. The timing light works best on the negative wire, but there is no easy way to tell which one that is, so either switch wires or flip the clamp on the timing light.
Also, if the plugs are fouled, then you need to have some resistance in either the plug cap or use resistor plugs