When i replaced the gussets on my build, I used Hugh's Dimpled model. NZ where i live has very strict modified vehicle rules. I can't go round making structural changes willy-nilly. If i do i have major hassles getting it certified and declared legal.
To cut a long story short, i use a guy who specialises in chassis repairs and building race bikes in NZ and Australia for any structural stuff. I know him pretty well, and at no stage did he say the factory neck gussets were marvels of design. In fact his exact words were "good job ditching those gussets. They look pretty stock Jap". Just some background....
My opinion is running without gussets at all is asking for a cracked frame. Same goes for ditching the upper mounts. I personally would ALWAYS retain the function of both. However the OP just asked what thickness metal to use...
Most importantly, I'd say bad welds are far more likely to fail than a neck gusset itself.