Hey Dave! Good to hear from you again, man!
This is an extraordinarily amazing adventure, voodoo curse. I just spent the whole evening re-reading all your threads/posts on this thing, back up to speed now. You've fixed at least a half-dozen genuine problems, and probably renewed many parts needing replacement, yet the original mystery remains, fascinating.
The good news is that you've addressed actual problem/failing areas, and have been thru the pits of demon hell (engine guts), so that now you've graduated to a higher level of understanding. Don't consider this as a waste of time/effort, sometimes the goddess of motorcycles does this to us so we'll avoid a bigger disaster later.
Now, down to the whine, still thinking about it being confined to the primary area, and that 10-20 'tinks' per revolution, and you've replaced a known/faulty right side ball bearing, we're left with:
1 - Primary drive gear lash. You mentioned replacing your `79 basket with an `81 basket. Although all this should be interchangeable, that article on gear lash does raise an issue. Could also check for tiny nicks/spurs on the gearteeth of both gears.
2 - I don't recall any basket spin test (you spun-test the hub, not the basket). Gotta pull the primary crank gear to be able to freely spin the basket. Looking for wobble/runout/sounds, anything unusual.
3 - Electric start gearing, a known problem area. On one of your old (April, I think) pics of the open right side, can't quite make out if the hairpin drag clip is properly positioned.
4 - Double-row transmission input shaft bearing, behind the clutch. Ignore this if you've replaced it. During the load application, the crank output primary will be loaded downwards. You resolved this by replacing that crank ball bearing. However, the clutch basket will be loaded upward, and what keeps it from displacing is the sleeve bushing and that double-row ball bearing. Any displacement here will open-up the primary drive spur gear spacing, and induce a sound as described in that gear-spacing article. Could try firmly grasping the clutch, or just the shaft, and try to force movement up/down, like checking ball joints on your car.
5 - Sleeve bushing and basket inner race clearance - As in #4 above, excessive clearance here can open-up the primary gear spacing.
Fortunately, all this checking is just inside the right side cover. How many times has THAT been off?