I actually have Mike's intakes on mine, lol. But, they are from years back and have held up OK. There were reports a year or maybe 2 back that the ones they had now were failing from the ethanol. Hopefully they've addressed that issue. Guess you'll know soon enough, lol.
I see one of your pics shows a fair amount of oil leaking down the cylinders. What you found on the carb bottoms may just be blow-back from that. It may be oil mixed with the dirt and varnish on the carb bottom. Did it feel like oil?
Luckily, there aren't many rubber parts in your carb set. There is only one o-ring, on the needle jet. There are, however, a couple other rubber items, and they're important. You want to keep carb cleaner away from them so they don't get damaged or ruined. The biggie is the rubber diaphragm attached to the top of the slide. This is what makes the vacuum operation of the carb work. Hose it down with carb cleaner and it will shrivel up like a used condom, lol. It's best that you remove the carb tops, remove the slide/diaphragm assembly, and place it faaaaar away from the carb bodies before squirting any carb cleaner at them. There are also little rubber seals on each end of the butterfly shafts. Again, keep carb cleaner away from them. It may not be possible to keep it totally out of them but don't go spraying that area directly. Anywhere you do use the carb cleaner, flush and rinse afterwards with something mild like WD40. Oh, the tips of the choke plungers are also rubber, so don't be spraying them either.
Actually, I start the cleaning process with WD40. Using the straw on the can, I spray it through the passageways. If they're clear, I don't even use the carb cleaner.