Champ, the taper on your end cone is not as steep as was typically used "in the day." Of course, the return wave is influenced by a ton of things, but one option you will have once you've run it and have a sense of the engine's characteristics is to steepen the end cone and thereby modify the effect of the return wave.
By now you've probably already fully welded the cone, but if not you might consider just tacking it on; run and dyno it and then tack on a steeper cone and assess the difference.
The difference may be noticeable or not, because its always all about the combination and the effect of a single change is often difficult to predict.
FYI, the Shell exhaust specs in the manual are with the #1 cam, which is noticeably softer than, say, the Megacycle 40 that many of the Yams ran. Nevertheless, the pipe lengths and diameter were amazingly similar between the Yams, Trumpets, BSAs, etc.
Great looking project and nice workmanship.