It could be the head gasket I guess but they usually seal at least for a while with no sealer. The factory used none. You might try increasing the torque on the 8 large acorn nuts. Most of us use 30 to 35. The original Yamaha spec of 25 or 26 wasn't really enough.
Usually you only hone the cylinders if installing new rings. If you re-use the old ones, it's not required. Maybe they need to re-seat now but that amount of oil coming out does seem extreme for just unseated rings. Did you space the end gaps 120° apart and install the rings with the numbers facing up? I guess it's possible the exhaust guide seal may have popped off.
I don't know what to tell you really. If the use of more torque doesn't fix it then you'd need to pull the motor out again. You might be better off just looking into it now. With the short time it's been together, you can probably get away with re-using the head gasket. Just clean it up good and add the rings of sealer to it. You're familiar with where to put them?