Sorry I was gone for a while-busy night putting the bike back together after gluing in the clutch seal.Happy to say its fixed.
I ran my bike for a while last night.Made it around the block a few times.I didn't check my charging system yet but didnt see or smell any burnt wires.My battery is new and fully charged so the bike system probably does not have to work too hard.
I used an automotive style ignition switch and have the main power feed from the battery running through a 25 amp circuit breaker.The bike has minimal wiring, just enough for the lights and ignition system.
dean martin--I cannot offer too much advise on your problem except using an ohm meter to check for shorts and short-to-ground issues.
Good luck and keep us posted
John